NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209718_1001922

Scaffold Ga0209718_1001922


Overview

Basic Information
Taxon OID3300025682 Open in IMG/M
Scaffold IDGa0209718_1001922 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21734
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002296Metagenome / Metatranscriptome573Y

Sequences

Protein IDFamilyRBSSequence
Ga0209718_100192217F002296N/AMKNKKHLFHFIVSESMNKNVIDFLLKEFKINTFSKLFETMFRFVNKKIPKMKRIIGNHRSEYAVIDNTGDKRVDKYLRISEADYLQIKRWHSLYNEFGMASTIRDIILFFYNGVMKYGLEQFLKIVGKKLRIDKLKNDFLDKMTQLLNITARKRLLYTLVIENYPRYVYRA
Ga0209718_10019229F002296N/AMKNKKHLFHFIVSESMNNNVIDFLLKEFKINTFSQLFETMFRLIDKKIPKMKRIIGDHRSEYAVVDNIDDKRLDKYLRISEADYLRIKRWHSLYNEFGMASTVRDIILFFYDGVMKYGLEEFLGIVGKKLRIDKLKNDFLGKMTQLLNTTARKQLLYSLVIENYPEYVCST

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