Scaffold Ga0209718_1001922

Overview

Basic Information

• Taxon OID: 3300025682
• Scaffold ID: Ga0209718_1001922
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21734
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002296	Metagenome / Metatranscriptome	573	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209718_100192217	F002296	N/A	MKNKKHLFHFIVSESMNKNVIDFLLKEFKINTFSKLFETMFRFVNKKIPKMKRIIGNHRSEYAVIDNTGDKRVDKYLRISEADYLQIKRWHSLYNEFGMASTIRDIILFFYNGVMKYGLEQFLKIVGKKLRIDKLKNDFLDKMTQLLNITARKRLLYTLVIENYPRYVYRA
Ga0209718_10019229	F002296	N/A	MKNKKHLFHFIVSESMNNNVIDFLLKEFKINTFSQLFETMFRLIDKKIPKMKRIIGDHRSEYAVVDNIDDKRLDKYLRISEADYLRIKRWHSLYNEFGMASTVRDIILFFYDGVMKYGLEEFLGIVGKKLRIDKLKNDFLGKMTQLLNTTARKQLLYSLVIENYPEYVCST