Scaffold Ga0209263_1056093

Overview

Basic Information

• Taxon OID: 3300025681
• Scaffold ID: Ga0209263_1056093
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012576	Metagenome / Metatranscriptome	279	Y
F086606	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209263_10560931	F086606	N/A	EDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSFVKSKDNITGVRNFSTNALIKGRVIHTSKIDKVEINILTNDIFWTHEFNRVDKTNNEAKTIYAFRKNFQGKCK
Ga0209263_10560932	F012576	N/A	MNSLLAYIQFIYIGLVIYGSVLTFGDTSVNTSISGIVAPILAWFAGTGLRASFNSDNKQTKGGIYMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS