Scaffold Ga0209306_1200620

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209306_1200620

Scaffold Ga0209306_1200620

Overview

Basic Information
Taxon OID	3300025680 Open in IMG/M
Scaffold ID	Ga0209306_1200620 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	544
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002834	Metagenome	527	Y
F056146	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209306_12006201	F002834	N/A	KHKKFITRKGQYDKPDGTKGKSFTSKNNTPCLVYWDLDNDGWRMATGEAKVRI
Ga0209306_12006202	F056146	AGG	MNTLLYIGLGFITLGFLLFIVAIIMERHYEVKLWELKQKEKNDRI

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