NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209306_1075444

Scaffold Ga0209306_1075444


Overview

Basic Information
Taxon OID3300025680 Open in IMG/M
Scaffold IDGa0209306_1075444 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009291Metagenome / Metatranscriptome320N
F104466Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209306_10754441F104466GAGGMATRKINEDALIKKVFKKVNKDLGVDAKTPPSQMKSFNEKLKAAPIPFLYRIKNVWKAFAALMAGFFTIGFIIARLTIPSETVMLTASVSPDIYDFNTFDSDGDGEWTLAEAQQAKLALAIQQFEYADENQDAKLSFEESRKAVNGISQGQFIALDEDGDGLHSFEEVDQDIAYMDYQEFNQLDL
Ga0209306_10754442F009291N/ARHYLIVIKRDFMYNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNVTRDRMKKSGFEVLPDDPDSGGDIPSNPGDSTMIEKCMEEVIKECGKDDPEGAELFSKVKVEGYAYSELTNIYGKTVSNLKKIVSEFNTMLKELIQPCLERAK
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