Scaffold Ga0209306_1007487

Overview

Basic Information

• Taxon OID: 3300025680
• Scaffold ID: Ga0209306_1007487
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4325
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035481	Metagenome	172	Y
F050002	Metagenome	146	Y
F057681	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209306_100748710	F050002	N/A	MKGKNKMKEYNVNRIHSDLNNFDMYLQEHFERVSYDDDADVNVCIKDMKYISKRLKKLDRIEKVLGINE
Ga0209306_10074873	F035481	N/A	MTQTNETIKKYKIIKFRKSGTQKVMETNLSLDEARRYCSRPDTKGKNWFCGFTQQN
Ga0209306_10074879	F057681	GAG	MMTITLHKVNFIKQMKGKNKMLRKYNKKMFLDYASAFDYYDEMKETMQSWSLKQFHDFYDFTHYDWESGKQLKPNEREK