Scaffold Ga0209306_1003349

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209306_1003349

Scaffold Ga0209306_1003349

Overview

Basic Information
Taxon OID	3300025680 Open in IMG/M
Scaffold ID	Ga0209306_1003349 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6995
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209306_100334910	F099320	N/A	MEQENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIETDGEVYFINLYED
Ga0209306_100334911	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPRNFIFQVVQNSEVNEQMLNRNRIEQNGKRI
Ga0209306_100334912	F018478	GAG	MVKEFEEMDWSKEYTYKNKKIYISHETKKYILCSFYENGKGTFKLDKTEFHG
Ga0209306_10033497	F027524	N/A	VNEEFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPNNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLRESTELDYLKSKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK
Ga0209306_10033498	F103288	N/A	MSIIVISILAILGWTSLFKQTFSTKEGFRYVYQPISKILYTLDFKPVSCAYCLSFWIGIAFTIVFMDITYMVIFLYFAKQD
Ga0209306_10033499	F025412	N/A	MNYRELKWGALKSYATKLGINTKGMTKVVLLEWLDAMPDVAHGIEELTPFTGIKQSHPLFEELRPYLPYLKAYKKLNAISRDPKVNKAIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNKLVDKYGAGERI

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