Scaffold Ga0209306_1000496

Overview

Basic Information

• Taxon OID: 3300025680
• Scaffold ID: Ga0209306_1000496
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20403
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033639	Metagenome / Metatranscriptome	177	N
F033826	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209306_100049615	F033826	AGGAG	MALCSASDVETFLEIDLSTTIEGHVTNTFIPYVEAAIKRYLGHDVEQATFVETFDGNEQKDLFLRHIPIASITSLTEDGNTLTSGNTKDFVHYDNGRLNRIAIRWSGIKPKNIVVTYVGGYASADIPDQIKFTAARAAARLVMTSLQVSAKADTGVVRSHLEDNTSTTNFDVAITERVGDYDVAFGDVVIQNLQPVLSNSDMAMLNPFKSRFFV
Ga0209306_10004967	F033639	AGGAG	MSYNTTGTISEVLIGTGVLYFKDRTTSSLAFPGDDAAGAWVSPTGMTVAWEEVGYSEDGWTLEVDKTFEDVMVAEEVDPIKTLKSAQEVRLTGELSQAGQGKLQIAMGGGTITEDETSNFSSGYDVYLPPLSDSFTEYALVLHTDGPAGADRQFHVPRAVNVGSFAMAHQKAPAKVSLATEFKVLVPDTTLNVGSSGGAYYLFRVVDNTNDTDELDIN