NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208695_1051939

Scaffold Ga0208695_1051939


Overview

Basic Information
Taxon OID3300025678 Open in IMG/M
Scaffold IDGa0208695_1051939 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1502
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023862Metagenome / Metatranscriptome208N
F036250Metagenome / Metatranscriptome170N
F058178Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208695_10519391F023862N/ALKNEVDGLSPDIEMQVLAWVGEILPIISDMPAEVIESLMPTDRWVILKSLMHIISGIYMQMPYDLPLDMPPAIILAEGKLYHVPTVRRVYNKDIYFSVVGFKTFSELLELQQLSDNIVKNAAMLCALLLRNNDDKEQLSEDEKLRRAEIFSNMSMLDFWRVFFSLMRGLEQSVNYTLLCSLRETEKVMRHHLLIQLWRKYYILPVERLGNLITSGFKKVFMRH
Ga0208695_10519392F036250N/AMSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLNHNRLNPAANKAVFWIKPPAIEALPAEGLHWRVPAIVAAGNLTTVLTVIDDFIFNYSQASYWRNIRPLPPSEIGIWDGWEAVAVDLYIDWNHICETTLP
Ga0208695_10519393F058178N/AMKLEWIIDELRSELQKQQHIASGAMAASLRIEKDENDYVVTGLNYSYWVNFGRAAGKRPPIAAIANWVNIKGLPKEAVWPIANSISVKGTPGQPYVFWEEGNKLKRTEFIEDTITRCKDRITEDLAAEWQAIIFE
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