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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025678 Open in IMG/M |
| Scaffold ID | Ga0208695_1005617 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7546 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hong Kong | |||||||
| Coordinates | Lat. (o) | 22.28 | Long. (o) | 114.17 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023862 | Metagenome / Metatranscriptome | 208 | N |
| F036250 | Metagenome / Metatranscriptome | 170 | N |
| F058178 | Metagenome / Metatranscriptome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208695_10056174 | F023862 | N/A | MRIKIQKKWYNVKSTWAELTIADAQKLAEHEPPEDYLKYLKNEVDGLSPDIEMQVLAWVGEILPIISDMPTEVIESLMPTDRWVILKSLMHIVSGIYLQIPYDVPTDQKPAVILIEGNLYHVPTVRRVYNKDIYFSTLDFKSFSELLELQQLSDNIIKNAAMLCALVLRKSDDKEQLFEDEKLRRAEIFSNMTMLDFWRVFFSLMRGLEQSVNYTLLCSLRETEKVMQHHLLIQLWKKYYYWPVKRLGRLLTSGFKKVFMRH |
| Ga0208695_10056175 | F036250 | N/A | MSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLTHNRINPAANKAIFWIKPPAIEALPTEGLHWRVPAIVAAGNLTTVLTIIDDFINNYSQASYWRNIRPLPASEIGIWDGWEAVAVDFYIDWNHICETTLP |
| Ga0208695_10056176 | F058178 | N/A | MKLEWIIDELRSELQKQQHIASGAMAASLRIEKDENDYVVTGLNYSYWVNYGRAAGKRPPIAAIANWVNIKGLPKEAVWPITISIGQKGTPGQPYVFWEEGNKLKRTEFIEDTITRCKDRITEDLAAEWQAIIFEKFKNKILEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |