NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208695_1001030

Scaffold Ga0208695_1001030


Overview

Basic Information
Taxon OID3300025678 Open in IMG/M
Scaffold IDGa0208695_1001030 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25087
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017303Metagenome / Metatranscriptome241Y
F049638Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0208695_100103021F049638N/AMKAKEIMEKYKITRNTLSNWVKKGWIKVEILPSGRYIYIDIKNNDSYENM
Ga0208695_100103027F017303N/AMSIIVKNSQLTHETISALNTLIELDIAAGVAFKLTRIIKELSSIVEDKLKMEKRILDKWVEKDEQGNPVLAKDQNGEIIEGTVNITNIDEFTKEMSDLMEIETEIPFDKINFEDLSLTTAKVKDLIKLEFLFN

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