NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208695_1000258

Scaffold Ga0208695_1000258


Overview

Basic Information
Taxon OID3300025678 Open in IMG/M
Scaffold IDGa0208695_1000258 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66865
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (11.65%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021773Metagenome / Metatranscriptome217Y
F039135Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0208695_100025883F039135GAGGMNYKLYKESITIDFEINNITDLVESLTIWSDALLSAISAEEVDMFDTFNLPAEDFKDKLNLDALESNVEFINSLSSIALKKSVLENSDTYQTFLNKPCKFMFIYGINRNELENPDYLLFQSWNETLDKWEDVKCYRVLGDIKRFYDKLSSRTIELVDGDQNYIYTTNNGNEWVLQNSDKENDIYKKVFRKEEFQDFIKERKIKVNII
Ga0208695_100025885F021773N/AMNMKWLRKFELFKESKTYSNKNLISEICISMVLLNNEFLDNILDRGLKARYSENSQIFLTDLKNLLISKNRLKLGKFVDKECVEDDEVSKINGLFDEVKFDIEKDWNVLVNARITARNIIDKLLPDQKLESDMISAIYWLGPNKDDEHQEDIVIELDGGKQYSFFLNKNLLSKKSASFNTFAENLLGQDLELLYKQEYLPKWDKLTQEWIRILYENANKNIQLHIEKFIDPKRIESIGYFEYFDIRHSDYKYKYLGEFIKDFDKNILKLSDLLTEVWKHRENCFMDPERVYAEWMEAKIVILNSRILENLFTTSLKSNFANDIKKLEDGFKLAGGAVKMKLFKSFIDKLGCEERPLYFLGSNGNIFNLLPERDFFRKNYDDMNIKFDYHVNFAVSEQEESNDFKVKLILELDDKKLLDMTITIKFSHEMSGRLTASYKFNLSNNFNYMIATKKSNNVEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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