Scaffold Ga0209719_1029517

Overview

Basic Information

• Taxon OID: 3300025677
• Scaffold ID: Ga0209719_1029517
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209719_10295172	F103498	GAGG	MDNTETCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVSSIKDTMITGFITLIITIIGVFATYILMNVIGFI
Ga0209719_10295174	F080199	GGAG	MKTMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDPDRGIIHDVRQIKFIYSIKLGQLIKRVNLIGANISLAGL
Ga0209719_10295175	F088950	GGCGG	MDIDGVLKELADFIEEKVPELDNKVTTIYPESNRFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFNLITDAFLNHGRELKTGIYKGISYISPVAPAFVEKNSAMKRELDIVVIEFRKRR