Scaffold Ga0209719

Basic Information
Taxon OID	3300025677 Open in IMG/M
Scaffold ID	Ga0209719_1010814 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209719_1010814 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5304
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5304

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	43.77	Long. (^o)	142.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan

Coordinates

Lat. (^o)

43.77

Long. (^o)

142.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072475	Metagenome / Metatranscriptome	121	N
F084407	Metagenome / Metatranscriptome	112	N
F092293	Metagenome / Metatranscriptome	107	N
F094051	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209719_10108142	F092293	GAGG	MTRPPTLTDRQIQIIRENLDLFPADILKLPEFTDADVTRHTIRNYQRRLKNAAVIDEEEVLLTRLKQYMNRYGLESRFHGPRGVTGFITHLEKQIDLRAVERDNSENSAV
Ga0209719_10108145	F094051	GGAGG	MGNTGILGKVQIEGNWTQKRLILPVIQAALERTQLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSAKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDIDKLDDTSGNRFVFGVCNATPGVVTVISKIKARQYDDPNLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGYMTES
Ga0209719_10108147	F072475	GAGG	MSESFASRFMSPDEKRAMIARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGNKAAYREAKKNPDAVFQYDDQLLALLNRVMKESIAEHHSDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSPEEEQNIRRWNGCSP
Ga0209719_10108149	F084407	AGGAGG	MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFKGDDPGCSEAGAERALAYLVAHYLASKDGDVGLQSEKIDDYGYTLSATAARSSRWYAEYQRQIDRCREALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209719_1010814

Overview

Ecosystem & Geography

Associated Families

Sequences