Scaffold Ga0209719_1009065

Overview

Basic Information

• Taxon OID: 3300025677
• Scaffold ID: Ga0209719_1009065
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6177
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033445	Metagenome / Metatranscriptome	177	N
F058173	Metagenome / Metatranscriptome	135	N
F068794	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209719_10090653	F068794	GGAGG	MAKKAKGLVFNHQTITIRGSFINMLFTMVLMILFIAAAFNASVAANLKLVAELIIAIYAISYGVWQGKKYLEGKKEKKDEEAT
Ga0209719_10090654	F058173	AGGAGG	MKMTYGIVAVVVAVALIAAFSYGRYHPSKDMIGELTEQVRQETAKQYEKRIAELDKQLKVSQTAYAESQKRYNSIIKKLKEIKDGKDAIKPPQDATELNSRFVALGYTPVSK
Ga0209719_10090655	F033445	AGGA	VELEKGRICEQQVVHYEKVTQELTEQIGLLQEQVGMMSKKFDETLKQLEVERKLAEEKDKARIEEIKQAGKPQWTMLFGGFGAGALLVGALILLL