NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1181410

Scaffold Ga0209657_1181410


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1181410 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024225Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0209657_11814101F024225N/AKSILTYIYDHYLFNDYRRLVEQDKWEINIRTLKDFKWNFYDKNIKNLSKEMPHGVTGDNVVDCYVTDESNRMYYLQNMMVICHELSHMILKLYYPDSRGMLDQDDTWGKAGDVRNYFSTEIHNRVARGQTRKFTAWHEREYYFYGIDIDDITNKRNLNNGI

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