Scaffold Ga0209657_1061499

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1061499
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1287
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007611	Metagenome / Metatranscriptome	348	Y
F029432	Metagenome	188	Y
F042015	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_10614991	F007611	N/A	MRKKWITVLDYETSRVYQYQVSINKHAEEFITFKGHRLSNIEWMEHQFGSIITK
Ga0209657_10614992	F000126	N/A	MRYYNITRKKGEWYNAKVIDSYGNKYQNYFETASEANDWIYYIWEKEEWFNSVNSQELLYKAIENCKRLDKNINVREI
Ga0209657_10614993	F029432	N/A	MMKYPKIVGWSVVITMWTSCGVGLNYIQIQEQGNNEVVNTAEDMIEWIGHDLESGKIDSTIADTYIVNLEEIITDSRK
Ga0209657_10614994	F042015	N/A	LLFSVPTEGRKVVKTITVEMNKNKKYWIGYGYVSVDRDGPEGFCHFASHQEHPMEYALNTKEYKSGEYQLIVK