Scaffold Ga0209657_1039950

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1039950
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1760
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048916	Metagenome	147	Y
F056153	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_10399502	F056153	GAG	MDNPAELAGFIETVGVPVATAIGLGGALWWLIKYVLGSIVEKITEAQAQTEADIKDLKGIVVALIDKTTAAQSDLIRLDTMIRVRYGLAPDEKRIARNPDNKVK
Ga0209657_10399505	F048916	GGAG	MKLKQRFVTGLVCLMFLTGCSSLGMLSELAAPAVNFGLGLYNADTYYSKECAWYEEIKLTPATKQWLTDSKPPEGVVKDLAKVARNNDIYKEVCDPREPKKE