Scaffold Ga0209657_1020946

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1020946
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2730
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_10209461	F068714	N/A	MKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADAVVKSFTDTNSLYEIFDKYNNNKYNIQLLKGVLEKHGDRIRILPAGFVIDDIFLVDRTGVCWIWDSNKQEADRTHRTNLGSGAVCIVVDKTQRLKLKTSNGLVEIDEMGYIILSKIEFLMDPNLNDTVFTHQI
Ga0209657_10209462	F070560	N/A	MLMTNQTQQFKQLVSSAKPEAQIPKAESMVTVSSLMTTADHAQFSKGLSSIFVDVPHHVSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG
Ga0209657_10209466	F011190	GGA	MCEIIMNFFRNLKKSFDGKDRLRNINQCMTCGKPSFFNSCLECETSDAYEGWEKK