Scaffold Ga0209657_1001400

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1001400
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14629
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006347	Metagenome / Metatranscriptome	375	Y
F028003	Metagenome / Metatranscriptome	193	Y
F077798	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_100140011	F028003	AGGAG	MKVNQSSEFDKYIIMCDKGQSKLTSDYLSYLKFKEVQDALVKISQTPGQNYMFAGEVYEKGMTCSQADRVLDDIFNCKTSMEMMGLIVKVARQIGFHEITPPRKTRWRQ
Ga0209657_100140015	F077798	N/A	MTDISKKFKMIIEHEELFKYNRIVMERLRELVTTKQSFNNISKDEIEALYIYLNRHNLPK
Ga0209657_10014005	F006347	AGGAG	MIKKIKQLLETLEQEINDGYNTLPDYETNNEGKTYVNSAQATLYELQKQLETLEQGLRVGKNFSLLGDNN