NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1025399

Scaffold Ga0208162_1025399


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1025399 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2224
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F025731Metagenome / Metatranscriptome200Y
F027834Metagenome / Metatranscriptome193Y
F048249Metagenome148N
F055727Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_10253992F018534N/AMALPTLTDFLNSWDKLIVTGMTPGAFDSVMTTTTNNIPVAIEYRHQINSSTGECSTVAYLVAYDEYGDRCALRNQTYGCFGDEEKQFHQWFAKKMASAMELDVRRRRDLSDDIDKVLAS
Ga0208162_10253993F048249N/AMKTSIFSTRIIRKGSQVLYRGSWGRDPQTIAEVIAIEQTQSAGDKYGDEVDAVSLDDHYVLTLNNGHWCYSYQVDGLVQLPETESVTK
Ga0208162_10253996F027834N/AMKNFSFDEAMCFAYGSTMLTGGSSIGIMGNNPEYFVPKYGFVVGGIVPEKSCDMDNREDFKSQYNILHSQAELAMERELAVVIGTWVEDGRIVFDLCSVLDDEQEALALAKKRGERAIYDLENKKEIFVK
Ga0208162_10253997F055727AGGMYNHFLEFTVSELVEAYTYFTIIHDYEGCRLVGEAFAENTNIEFLNF
Ga0208162_10253998F025731N/AMSYNTDTQRKKAQMASALFNDVQFLSMDAIRNTAEFDALSCDDQMRLEDLVGTQKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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