Scaffold Ga0208162_1019707

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1019707
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2621
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008883	Metagenome / Metatranscriptome	326	Y
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F038216	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10197071	F038216	GAG	MPPQRYTVMLKQVNYARTELIEGSHRTLSDAVTMYAIYYSDWSESLEALSQYYDTDEWKDSGYGEDLPRHRELVQRRNAALRNVHEIGDELRSLGLDVDLCEWATVDEHFEDAA
Ga0208162_10197073	F026889	GAGG	MNNVIEEYLALVERTVYHSDLDAFDALEQLEEQYPELADLVYQSAGPLAYDIQNNEVIS
Ga0208162_10197074	F008883	GAGG	MNFGRYTIWYNHEDHVWDIYDGNKGYKYPEYTINNYSGLMNKLRDRFGFLDTDRNHRRFWRVMRWWDRLRHGSTAYSRGRR
Ga0208162_10197078	F024320	AGGGGG	MTFEEYEQGYYSGDSEDPSGPPEDPETHAMIEHLVEFDTEMYRLESRRKYKGLSYKHLETLMVELHGREWR