Scaffold Ga0208162_1018609

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1018609
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2720
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031706	Metagenome	182	N
F038473	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10186092	F038473	AGGAG	MDLGFSIEIEYPKEMIQTSPLPPGEHMVEIQYIGSKPTKSGGWMLSVKMANDHGHVWDNFNIGHASETTRQSAQKKLGRLARCSGLEGSFSNTDDLLNRTVAVELGLNQNGYIEVLKYKEKLSQVPVMDTDDDEPEF
Ga0208162_10186093	F031706	GGAGG	MIEGYLEDMIMERKVGVSLQEIQNLYSVMTWQVYLRLLQEDRRDSVPADLVEAAERYVIAFNTWDQERNLAD