Scaffold Ga0208162_1016788

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1016788
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F015990	Metagenome	250	N
F059345	Metagenome	134	Y
F059873	Metagenome	133	N
F083372	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_101678810	F015990	AGGAG	MGKGSGRRKEDINKIRNNWDSIFKKRDKKQITKVMIEFEMPGYPSIDEMRNYVEKLHKEDKLVFLTTTTNA
Ga0208162_10167884	F002399	AGGCGG	MTIKTKTHKSVIGQLRKKYGLKDNTPIHKVEQIMTAEDWQAFSMALTFPNGKPTQRGK
Ga0208162_10167885	F059345	AGGGGG	MNIEHTKLESIHSALQELQQEFNIPDDHEHLENAFKFTEDLREDYYKGGNNE
Ga0208162_10167887	F059873	AGGCGG	MSIEYFGVKIKATTYGDFPDDVKEITHAEIQCSVPCDESKTKKFEKAKDNLLQAVIDMYALEDQHQVDVTIEYEYFGVNNQ
Ga0208162_10167888	F083372	GGAG	MIMQQYKISYPRAEFCYAKHLRDNLKHEGEIIYPHQPSCRLLEDGTWLLITITGERLGTVSPSGTVRLT