NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1010876

Scaffold Ga0208162_1010876


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1010876 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3825
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016269Metagenome / Metatranscriptome248Y
F017473Metagenome240Y
F019909Metagenome / Metatranscriptome227Y
F020115Metagenome / Metatranscriptome226Y
F025729Metagenome / Metatranscriptome200Y
F025731Metagenome / Metatranscriptome200Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_101087611F016269GAGMKVNDFIFICEEYNIDPAIASEDEGVRKILKTPTSDVNQQLMLSGYLHKNF
Ga0208162_101087612F017473N/AMTTQRKEEHIRNIAFCIQNGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDEFIEQNPEIND
Ga0208162_10108762F025731N/AMSHNTDTQRKKAQMASALFNDVQFLSMDAIRNTDVWDSLSCDDQMRLEDLVGQAY
Ga0208162_10108766F025729N/AMDKTILDRLVYCEETYAGETETWRDPVTGDYWHVPIRIVRDWDDAMNLNDPN
Ga0208162_10108767F020115N/AMMNNTMTYEQFEILRQWADRVANTANDTDTHIRAIDIVHDIAGILANDEHFLPRL
Ga0208162_10108768F032639N/AMNKKLINDDGFYVGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDAITYMIEEGQLKTEE
Ga0208162_10108769F019909N/AMTKFEQHIGKQIPKEVLDYMASRTIEQIERQAQKLKFDSWCPLVMENDSPELRKELKQASDLLFQWIDFQSVTK
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