Scaffold Ga0208162_1009851

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1009851
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4075
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F015793	Metagenome / Metatranscriptome	252	Y
F066266	Metagenome / Metatranscriptome	127	N
F069855	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10098511	F066266	AGGAGG	MSILNEHELEKKIVSTIKYRIQEALAYRTYNSRTNKSCHQDYRKTIRDAKDFDELKKIMSEFVDDL
Ga0208162_10098514	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNKVFYSTDRGLVFNLLPSRYLCLITK
Ga0208162_10098516	F069855	GAGG	MAMKKVIELHPLGGTVVKLKHVETVEPKKLSKNQRKKLLKGYYSKEKHVAMLTSIMNGKYYNRKANNKKGILPSQWNTVFKSVMKMPVDIQAHMIREQEKRTAV
Ga0208162_10098519	F001521	AGTAG	MKLWITEFVNEEGIGLGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTTIKKKTIH