Scaffold Ga0208162_1008571

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1008571
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4442
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007722	Metagenome / Metatranscriptome	346	Y
F009559	Metagenome	316	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10085711	F009559	N/A	MDQVLLYTSVILAVVSFFLCCYACARVGKLLNSVKGLDWDTIACLTGDIGTIK
Ga0208162_10085714	F013311	AGGAGG	LAFLGDFGKFFGLGSSEQVLGDVGKTVGTALFGPQVGIAAEQGGRALGRATSNLAGDDISPFSTADQALEQSAVPVSQAGSPRPSETSMIGLTGMPVQTAGFGAIPQAIQGLRGLAPQIGKFFGSPAGSIGTGIATGVGVNAFTSGQMRREKPVLTQSRRNKARVRQLVNFMGIEGAAQFLSQASGQNVMPGDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPMRRASSTTLIKN
Ga0208162_10085719	F007722	N/A	RVGKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG