Scaffold Ga0208162_1005727

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1005727
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5709
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100572711	F020815	AGGA	MRLYMNKQGEWVGTQAEAKKIGATMVDVPTDKPNLLKWLNTFTGKIDLAEIPPLDAAKEDAENKTKPGGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADQHKETQQ
Ga0208162_100572712	F087896	AGGAG	MNYKTKQGAIISDDGYTQVIKQHNLGYGWEATLWDNDRLVITHDATGETLSIPPESTQKLRDIFAAIKKETDNG
Ga0208162_100572715	F051059	GAGG	VYYALDIYSKATKKMLAYHSSDSRKDILHLKKMYAKNNFVYIKECFGETDEDKENYRQSTKYGDTSIAS
Ga0208162_100572716	F032993	GGAG	MKTKKIIGSLPNMEIPQLPVSLLSHMEAMGLLPVSHDDDGVNDIELPWRNNTNYFRKDVLDENNEPLF
Ga0208162_10057279	F028349	AGGAG	MKVRTYHKNGKAVMFLGYSDIDASNAAKVVMGEVGSVGYFKPRLGTDEDIYDWQYVKEITDEDLKEALGR