Scaffold Ga0208162_1005395

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1005395
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5919
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F008346	Metagenome	335	Y
F038657	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10053952	F006845	GAG	MKSYKRQMDLNSYLFEEDFEEFCRISYNKIQTACEFLGIINDEDYEGFKERCYSQLETDYINSIENLTIH
Ga0208162_10053953	F038657	GGAG	MSILGGMSSTDNKQQIYLGFKHMGQKFFANGETELDFKYLQIDPETAKSGWGRYTKADGFEYKWDAKLGVVEPKPDEDWRRAFSCWVMPHGAEHPLLWQRFTFSEVSAFDSILGYFWNDRANNPGKLPVVEYTGSKIIQVGMGTSSELAFKFSKWADKFDGFAIPDWYIDPDAPADDGFVSPNEGLADKVNEMIVKTSELSDDDIPF
Ga0208162_10053958	F008346	N/A	MPIKLKPSSKIRDKATGKFITEHYYLKSMTIQELNDYIESSSAKKKIIQKCKNEIARRNK