Scaffold Ga0208162_1003771

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1003771
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7191
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043371	Metagenome	156	N
F071198	Metagenome	122	N
F080003	Metagenome	115	Y
F097263	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100377111	F097263	N/A	MTRLKRPRNNPGKEVPDNLLFTALRWETLRQQYFTSIGRLDDAMEAHYLRTIYSKRLWDEHGISVDLK
Ga0208162_100377113	F080003	N/A	MKTFEVGQVYFGTLCVAHGDFPVMCVKRTEKSVWFEHVNMPQHYAAGRCKAQKFYDGTEAAMFRGWYISSTKLTGGDFDPYTI
Ga0208162_10037714	F043371	GGAG	VTTNITTPQDLIDALLQIREERDELNAREAFLKEQLEGAMALGELDPNETSDGVYQFSNAKYSRIERSTFKLSKEAQKAIDTIKEKDIDSGQAQRKLTIFYRLDSMI
Ga0208162_10037715	F071198	N/A	MKNTLGNLACFLIAAAGFAFIGYEATAHHGSTHSGTQPYVKFTPECDK