Scaffold Ga0208162_1002134

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1002134
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9826
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (30.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F020003	Metagenome	226	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y
F095346	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100213416	F045677	N/A	MKEIKTYLPEELVDRLSIEAKEKGVHRSELIRERLSQPPNHYGLTTSDFHKAVTKVRRRSSYGLDRQQAESIVATVFNELFSSRDGD
Ga0208162_100213417	F048238	N/A	MATKNVQLHYCQIADEHCPLAITRFTSFDMDDKPLAVEQVTYESNIDYMERQVINALSCNVEVSILTATPIHEFKRLYYLFNNDK
Ga0208162_100213419	F006772	N/A	MERLNKAIQLSTTADLQRAAMFLEGARKVRQGSSRQRSNARSAQATAWKKKVDDSITW
Ga0208162_10021342	F095346	N/A	MKRSNDTKAKHVKEAKRLLSLGYRPGAVALRLERLFGMSRATSFRDVETASAEMDAENIQLDADTDPTPLIEQRDAMLRDLEQAWMEASAQHNVQELMQLSRAFERLHRMGGNQSQTY
Ga0208162_100213420	F056529	N/A	MATKHGNRVYIQVLLEPFRGELFMQEADAQGIKPSALIRQLVYDYLAENTKEEAYCEALVNDKQKWQDAVDARLEGRAKTRRSRVMQFQQDIDASN
Ga0208162_10021347	F020003	GAGG	MSTKLNGNKFSPSGSRVPTDLLPTAIRYEAARAVIFEEWGNYVRANDCLRLKRYYERRAMEECISDPGPT