Scaffold Ga0208162_1001812

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1001812
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10811
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F073486	Metagenome	120	Y
F085642	Metagenome	111	N
F088830	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100181218	F001841	AGG	MRVAAWLFWRDPVAKPEPPQPKRPRKPILGYTVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFHYIVGTALRQGADVAVLTQYEPEALGVQE
Ga0208162_100181220	F088830	N/A	MDYTIKTDSLKLSRWYYAVLASKAVLQQKVAELETNGYVNPVFYMEKLEDLEDLEMFLKMTWDQWLESLAVDQTAVEESK
Ga0208162_10018126	F073486	N/A	MAQTFQWTGSHVSGSTACAVVRYAGPTNTRGSRWLASIRRDRETVWRASATFEEGPITAALRAATKGGVEWSCISCHSIDADTYAIGF
Ga0208162_10018129	F085642	AGG	VASTFSTSEPALTRTKARKQAAKDSRKEERDLIRDQKRQLRDLRYIAEKQTIPADLAADFWQQLIQLQHEHGKEGTTEFWWALVPKWEQVQLSRGGGLCSDDLKPANAPRLTETHKRVAAALERASHNSRTVDAAQVLQAWAMEDGTV