Scaffold Ga0208162_1001216

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1001216
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13727
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F017473	Metagenome	240	Y
F018534	Metagenome / Metatranscriptome	234	Y
F027834	Metagenome / Metatranscriptome	193	Y
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100121611	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGTTVAIEYRHQISAHNGETSTVAYLVATDSNGNRITLRNQAYGCFDDEEKQFHQWFATKMASAMELDARRRRDLSDGIDMILA
Ga0208162_100121614	F084107	N/A	MNEDLKLQISMAFSDTGAYWELIHILSNQNNILNRDEIDELVDRLEAFIVQEIDEIIDER
Ga0208162_100121622	F017473	N/A	MTAQRKEEHIRNITFCIKTGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFEEFLNQNPNINE
Ga0208162_100121623	F008453	N/A	MSNYAVYRVFRDWNKRPKVLMEGLTREQAQTIVRNTPSEEDSMVVFDEEPRSKQWGRR
Ga0208162_10012166	F027834	N/A	MQNFSFDEAMCFAYGSTMLTGGSSIGVMDNGEHYVPKYGYVVGGIVPEKSIKMDNESAFKHTYNRFFYQAELALERESAVVIGTWVEDGKIVFDLCNVLDDMKDALELAAKRGERAIFDLEEQREIFVNTGA