Scaffold Ga0208162_1000907

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000907
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16045
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F029405	Metagenome / Metatranscriptome	188	Y
F040073	Metagenome	162	Y
F044444	Metagenome / Metatranscriptome	154	Y
F056537	Metagenome	137	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100090710	F001120	GGAG	MTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF
Ga0208162_100090712	F020342	N/A	MSAVTDNINLFDRINLAACAQRRASANVLNSTRFEGEYDTARLWMKYRLIKTTNYSYIED
Ga0208162_100090713	F001807	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGDPD
Ga0208162_100090724	F056537	GAGG	MMNDIIYNNRHILSVSIDTKAMTLTYRGCKYNQEDQAKVDRNWWNLAHRPWLCLKYRNICYFPYVTGGQIK
Ga0208162_10009073	F029405	N/A	MRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESEAFEWDGIEEISSAERNACDHYNERYVIND
Ga0208162_100090730	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQGIATDEIVDEMIHFLRGIGHLELNIIERMHEMSRQYLELYREGVTVELPLQQDELEEVE
Ga0208162_100090732	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCTSMSELKEMATLLTKIATQRQVAIKGLVNDAMELMQENYLHKLPTNND
Ga0208162_100090734	F002333	N/A	MSTQLQQQELNAAQSMIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWHHAHALGHLTSNAKLQTHWADRFIHVTDSTKVITLLQSDQTDIGHLVAPDGMRLPNRPLDLGSDMETQESDVPAVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFGKYRELLCKRTDARNASPSGTPEKCVAWWYQPPADSLSDGRFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK
Ga0208162_100090735	F044444	N/A	MTDDILEYARQLAMQPRNDTIMGDKRYDLEIPEDTHWELVKLAADLKMHHEDYAINVLIGHVESELDRKTKD
Ga0208162_10009075	F019817	N/A	MPAVAPVALTINQRNLYAYFLNHRKKYGNTPCFVPRVPSQLSRLEQYLQALTKLEEYGLIRVDRSSANYTGWIIREPKGV
Ga0208162_10009078	F001165	N/A	MNNNTPRIPDSLDMQRLQAMQLVAKMKESADKNGIGFIGGFVAPNGEKFVMSNMNDEDTQALLPDNLK