NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1000907

Scaffold Ga0208162_1000907


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1000907 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16045
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (37.14%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002333Metagenome569Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y
F029405Metagenome / Metatranscriptome188Y
F040073Metagenome162Y
F044444Metagenome / Metatranscriptome154Y
F056537Metagenome137Y
F058089Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100090710F001120GGAGMTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF
Ga0208162_100090712F020342N/AMSAVTDNINLFDRINLAACAQRRASANVLNSTRFEGEYDTARLWMKYRLIKTTNYSYIED
Ga0208162_100090713F001807GAGGMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGDPD
Ga0208162_100090724F056537GAGGMMNDIIYNNRHILSVSIDTKAMTLTYRGCKYNQEDQAKVDRNWWNLAHRPWLCLKYRNICYFPYVTGGQIK
Ga0208162_10009073F029405N/AMRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESEAFEWDGIEEISSAERNACDHYNERYVIND
Ga0208162_100090730F058089N/AMSTQPEDQFTLLYEDGKRKVLHEFQGIATDEIVDEMIHFLRGIGHLELNIIERMHEMSRQYLELYREGVTVELPLQQDELEEVE
Ga0208162_100090732F040073N/AMLKFEMSPEDMFWQEKMIRSINDCTSMSELKEMATLLTKIATQRQVAIKGLVNDAMELMQENYLHKLPTNND
Ga0208162_100090734F002333N/AMSTQLQQQELNAAQSMIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWHHAHALGHLTSNAKLQTHWADRFIHVTDSTKVITLLQSDQTDIGHLVAPDGMRLPNRPLDLGSDMETQESDVPAVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFGKYRELLCKRTDARNASPSGTPEKCVAWWYQPPADSLSDGRFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK
Ga0208162_100090735F044444N/AMTDDILEYARQLAMQPRNDTIMGDKRYDLEIPEDTHWELVKLAADLKMHHEDYAINVLIGHVESELDRKTKD
Ga0208162_10009075F019817N/AMPAVAPVALTINQRNLYAYFLNHRKKYGNTPCFVPRVPSQLSRLEQYLQALTKLEEYGLIRVDRSSANYTGWIIREPKGV
Ga0208162_10009078F001165N/AMNNNTPRIPDSLDMQRLQAMQLVAKMKESADKNGIGFIGGFVAPNGEKFVMSNMNDEDTQALLPDNLK

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