Basic Information | |
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Taxon OID | 3300025674 Open in IMG/M |
Scaffold ID | Ga0208162_1000907 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16045 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (37.14%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F002333 | Metagenome | 569 | Y |
F019817 | Metagenome | 227 | Y |
F020342 | Metagenome / Metatranscriptome | 224 | Y |
F029405 | Metagenome / Metatranscriptome | 188 | Y |
F040073 | Metagenome | 162 | Y |
F044444 | Metagenome / Metatranscriptome | 154 | Y |
F056537 | Metagenome | 137 | Y |
F058089 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208162_100090710 | F001120 | GGAG | MTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF |
Ga0208162_100090712 | F020342 | N/A | MSAVTDNINLFDRINLAACAQRRASANVLNSTRFEGEYDTARLWMKYRLIKTTNYSYIED |
Ga0208162_100090713 | F001807 | GAGG | MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGDPD |
Ga0208162_100090724 | F056537 | GAGG | MMNDIIYNNRHILSVSIDTKAMTLTYRGCKYNQEDQAKVDRNWWNLAHRPWLCLKYRNICYFPYVTGGQIK |
Ga0208162_10009073 | F029405 | N/A | MRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESEAFEWDGIEEISSAERNACDHYNERYVIND |
Ga0208162_100090730 | F058089 | N/A | MSTQPEDQFTLLYEDGKRKVLHEFQGIATDEIVDEMIHFLRGIGHLELNIIERMHEMSRQYLELYREGVTVELPLQQDELEEVE |
Ga0208162_100090732 | F040073 | N/A | MLKFEMSPEDMFWQEKMIRSINDCTSMSELKEMATLLTKIATQRQVAIKGLVNDAMELMQENYLHKLPTNND |
Ga0208162_100090734 | F002333 | N/A | MSTQLQQQELNAAQSMIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWHHAHALGHLTSNAKLQTHWADRFIHVTDSTKVITLLQSDQTDIGHLVAPDGMRLPNRPLDLGSDMETQESDVPAVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFGKYRELLCKRTDARNASPSGTPEKCVAWWYQPPADSLSDGRFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK |
Ga0208162_100090735 | F044444 | N/A | MTDDILEYARQLAMQPRNDTIMGDKRYDLEIPEDTHWELVKLAADLKMHHEDYAINVLIGHVESELDRKTKD |
Ga0208162_10009075 | F019817 | N/A | MPAVAPVALTINQRNLYAYFLNHRKKYGNTPCFVPRVPSQLSRLEQYLQALTKLEEYGLIRVDRSSANYTGWIIREPKGV |
Ga0208162_10009078 | F001165 | N/A | MNNNTPRIPDSLDMQRLQAMQLVAKMKESADKNGIGFIGGFVAPNGEKFVMSNMNDEDTQALLPDNLK |
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