Scaffold Ga0208162_1000780

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000780
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17473
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024199	Metagenome	207	Y
F026123	Metagenome	199	Y
F030248	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100078014	F024199	AGG	LKMEKKNNFGEISSENIKIGDIVAWSRWDPSISNWKEHLGVVLEVKNSIISNRMVCITLIMPLKDPKIPVELFTFSLKLISSVEEKEV
Ga0208162_100078015	F026123	AGTAGG	MAWDDLDKDRIEQIIRQISGKELKESTELVSPAMIKGSGIIFLWAPTKKTLIKVNRGIRVYVVSYDMDEKERVLIYDGYNLLAIHPDDLIETGFN
Ga0208162_10007805	F030248	GAGG	MKLIIENFRRFLTEQNFISDIPLETDEEGNIILYHVSGAEDIEELDPDVAARNLKNYTTAEYRTWDRPRVFFFTRLGQEDTGIGRIDGVPYRVRLRPNQLYPIMDDPAGLSSKQEQQNWMEANIPEFAEKLQAAQKCSSSEQYNQWHICSKTPDSDGLAFTEERFAGKKFLVDNPKFHHLKPNTYEMVANLAEERYNSIGFIYPQSNQQDNQIVALWRKVPAEKLDKDFY