Scaffold Ga0208162_1000547

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000547
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21617
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (34.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036202	Metagenome / Metatranscriptome	170	N
F043371	Metagenome	156	N
F050358	Metagenome	145	Y
F061821	Metagenome	131	N
F105098	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100054710	F061821	N/A	MRNFVAKVHFTIEERDHIDAHAKALNLSRSQLIRLRALGDPTPGVAPAKPQLTQRQYQNAVMASLKASQGSCSRHTCEAITAAVLCTVFQPHDKSASSSHPSQVG
Ga0208162_100054711	F105098	AGGAGG	MPTKRLTRISTESGARQILQRMIDAGRITVQDLDKAPPGHINPQAYRNLMRDVAQPPKVEVVSPRDLPPAEEPLPF
Ga0208162_100054712	F036202	N/A	MFPLYDYANRGKCVHCVFDNKERISPKSVYRIATSAMFSETELGEVRFHYSPVASEHAIGMYDKDGYYCTYCPPIPGAPGAQGLGRWVKHPWAEEEKQRQEAFD
Ga0208162_100054718	F050358	N/A	VETLLQQLEQAKQNLSDAQTEYAHCFARGDFKECGKAKRKVGKAMREVQSLVAQKLALR
Ga0208162_100054727	F043371	AGCAG	MTTDITTAQDLIDALLQIREERAELEAREEFIKEQLQGAMALGELDSNQLEEGVYQFSNAKYSRVERSSYKYSKQALKAINAIKEQDVDAGLAERNVTIFWRLNSVI