Scaffold Ga0208162_1000307

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000307
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28887
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F046021	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100030715	F009843	N/A	MKKVELGGQERPIRFSYLALKDICNKCGLKLSEMNQLGSEIDHIGIITYFGLKAGAKKIGEPFKYKISDIEDWLDNEEFSKINEIFEAFQLDQPQSEGK
Ga0208162_100030728	F046021	GGA	MTKKKLTPKYNDNKSIRARIDRLLEKNASNVANSGTGSKLDIGGEDEVKLAWQDIQAKIKEIDPVFYDIIKER
Ga0208162_100030729	F019648	N/A	MTSTELELLERFAKKYDIDCKPSESQYDFWDFTYEWDDRKFYCEMKKRNFTLDYAKENYSSGLLLEMHKYERILRRAKNEKGSQGLYVNFFDDDKVLIYNLNKVRINKWFWKTMPETTDFGRGKFVYKYITFLDYNKGKVLYI
Ga0208162_100030731	F032280	N/A	MADEITMKAINLLREADSSMDEVESLDKFIAHQAEVVKMYKQFKDHPRAKELKPRLTVFEESAFAFTYIYTMMKTYKREKMLANARELEMANAVIELKQELDILTKINKDDLS