Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1000288 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1000288 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29754
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (24.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29754

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (24.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007306	Metagenome	353	Y
F043372	Metagenome	156	N
F056579	Metagenome	137	N
F071197	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100028827	F071197	N/A	MNQLAPLTADIVAAKQGQQMSSLNDDDLGAFLRDEVKKALNRLGRKQIDPDVLKIAVEDIANDLRTKYRILTIEEVSIAFREGARRNEEHLFSSRTLAQWLETYMKEIRVKAFDHSIKPKKALPQETFDRDEFILKAFDRFNIGGGLYGAERLYHHLEKMGKIDMTTIEKWQALKDTIEKEMEDTANCVSNPVLRNAARKRMDELKVAKLEPTKAEEWIRVATMRHIVESYFRKCYLSKVSPV
Ga0208162_100028835	F056579	N/A	MNYNPKPIEREKIEDAMMYMIDQVEKGNTEAVQTFLDLRQIEQIAKYCQKQIEEQTIAEVNDNHGRIDRGNLIIESRSSAGRWKFTDDAHAALKQQLKDAEELRKQAHKLHLKGSEVIDPETGEIVPPADYTPGKDSIFISKARKS
Ga0208162_100028838	F043372	N/A	MCKRVLYLALVKTINTMKTLFERLRPEQRKRLQELKNEMPFVQEGLVKTLQQNTLIINVPFGDVIDIVRLIGAPEMSIGDGITAIYDCFEDIDKTGDDPGLQSDHNAQTTNT
Ga0208162_100028844	F007306	N/A	MSWYIGTREEVEQYNQKVNEAKQYKGSITSNWANPRQHPDGSKWAIVANNSIEPQEDSNLIFEVQLSDDWTPEVEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1000288

Overview

Ecosystem & Geography

Associated Families

Sequences