Scaffold Ga0208162_1000161

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1000161
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37199
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (51.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018706	Metagenome	233	Y
F031462	Metagenome	182	Y
F039587	Metagenome	163	N
F095312	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100016121	F095312	N/A	MKYILYSTEEEWDASNDAMNTFFGLPDSHGNERYAEISQVTNEDNSDYGKYIFPVTTQGSFITIDKFNVTEMVEFDPTWSPPDPE
Ga0208162_100016123	F018706	N/A	MIDRASVLGMSGTAATFGLSTFDSMIGIAVGLVTLVYMSIKLYQEVKKK
Ga0208162_100016130	F039587	N/A	METNLNQYHNLFLTKSEVKEIFRLKSDKALQLFKREFGIRKRGRLFLASDVKKVIALFTEEAA
Ga0208162_100016146	F031462	AGG	VERFCGLAGMTNTLLQATIVRRFIRLGIKPVKAMDMVKRMNEGDAIFIVRNHINLKPLIILTLIKNHIKPNNTDET