Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1000075 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1000075 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47220
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (44.74%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

47220

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (44.74%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F004106	Metagenome	453	Y
F006983	Metagenome	360	Y
F007971	Metagenome / Metatranscriptome	341	Y
F010994	Metagenome	296	Y
F041151	Metagenome	160	Y
F097241	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100007523	F006983	N/A	MAKSHGGASHVDYAIGAELIHDTAVHTGKFHHIDFYENTTIQSIVSTNIIDNSFSGASVDQGAHLTGYFTSIQLQNGACIAYKI
Ga0208162_100007524	F004106	AGGA	MSTLQAIDNTYSIGGDFVTSTDARTGRWNRIVILKNNTSFAALTAQNWTGNSPVGESFPAGFEIQGVFTAFTLNNGGAVIAYKI
Ga0208162_100007532	F010994	N/A	MELPSLRHFRNEGIYFVFSDPVEALIGEAWVPAVYTDKGWATADGSTLLASVEDWRYAVEEGQEQKSDAAKHQDRDQGRKTTKASGSNRIRKSRKITQAEG
Ga0208162_100007553	F097241	N/A	MIYKAPVKAVPSELLYTGYCWETTREAYFARHNNWFLASDCRELRKLYAARLWEECGVSVNLEEGFSC
Ga0208162_100007563	F041151	N/A	MTTAQSLIDELLAIRSEREELDAREAFVKEQIQGAIALGELDDFQTEDGIYEFPNAKYTRCQRNSYKHSKEAEKAIRTIKEQDIDSGLATRNVTIYYQLRTMS
Ga0208162_100007572	F003661	N/A	MDPTTAAAIAIIVAAGSEIITLLPIKENSWVQLIIKALKVVFPKR
Ga0208162_100007573	F002317	GGCGG	MEQHEEALITAKPPESPFNQMIPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLEGRVRYIEMSIGKSR
Ga0208162_100007574	F007971	N/A	MAVKSKTALGRVDHKVGRPKTTSQGMGQHSRPRRRGKKPLRGQGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1000075

Overview

Ecosystem & Geography

Associated Families

Sequences