NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208898_1064829

Scaffold Ga0208898_1064829


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1064829 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F025017Metagenome / Metatranscriptome203N
F036684Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0208898_10648291F025017N/AMAQLSNISYRQGIRSKGFQVTVPTTGAQQTLSLSGLAKSFEGIIL
Ga0208898_10648292F036684N/AMANQVSKLNYVDAKLGAPTSGQQTTRYIYDSVTPGAGGTNVTFFQNFAGKTQFQTNLTTNKLDSMESMVIKSIYLALAPGTAGTLNLTGHLNLNIYVGNQCVLKDFDPSFNASNRGLSFDRLHSGFNNSSIIEVRLLTDIVIPPQVNFKATLELAENTAVEDTSITLGLKGYGKIFSAGMSF
Ga0208898_10648293F002259N/AQDKMLYVANKLGLTSLKDMQGSTRVVYDQQTTVALDHTLFAGSAQRNFPLTNLGANGNQFQVDEALLVEQIGFFIPDAADGENYAGLTSNSVKFDLVIGNKTVIKDAVVELGGQQAFYNDGTAGSCVMTLEGVGILIPPQVEFYVRASTFAVTTRVATSQRLGCYLFGTAALLNFNTTI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.