Scaffold Ga0208898_1051478

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1051478
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1491
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095405	Metagenome	105	N
F099216	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10514781	F099216	GGA	MQVHDMEVGQSVEVPNATVKQGQRGTSWARRKASSCRRFSVTESGSGVIIERLPDRELVGDAIRNGKEKIFVRQSVEAARQAIRRAIRAGELSGFWHVEPSGSGSMLQQMATQADVDAAAADYRRWRRARR
Ga0208898_10514783	F095405	GGAG	MGGNCQGMGFPVCPRCRCGLLESAGTEIAEWGTVVHCEECGCDSMVYVEPDGSYSSYCFSGHNWHMLNGCKVCSLCGVEDEGGL