Scaffold Ga0208898_1049958

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1049958
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1525
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033412	Metagenome	177	N
F034560	Metagenome	174	N
F045071	Metagenome	153	N
F055697	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10499581	F045071	N/A	VGGWGRQAIAFLAEHGTVPTYVCGNNDQSRRHNTAANRQTALQYRVTDGFELRPRNLDQMVSLLLRGIPLAAGYNWWGHEVTLTDADWIDSEIAVIIRNSWQGWGDFGFGVLQGSRMLADDLVAVSGSSLTGRRAQS
Ga0208898_10499582	F055697	AGGCGG	MRTAAAVFVFCTVLHFPLPDGWKFTIAEPPAAAQPDWYLVSFGAEWCGPCRAWKRDHLAATRKVLPVVTVDITKDPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRTAEQVRRLIPETVPDWTRETEAAPPLPE
Ga0208898_10499583	F034560	N/A	MWKNSRKPAGDPMADDNETPQDDDNDGVEWRTLNRTVRVDAATSQKLVDWIGPHLRLIVAAVAWGVFIVATCYAASLVL
Ga0208898_10499584	F033412	GAG	MTAEIDAEFWRVLLAAWGCFAMGVAIWHYRKELHGYGLQPVGRLLLAISPALLSAFGYHSTEAVRTVELMAQAVPVRHVGHEIEPVIADRDTILTPGGATVEYIRTNYGPERRGAGSVRVGDEHTGRRSASSG