Scaffold Ga0208898_1034469

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1034469
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2020
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010571	Metagenome	302	Y
F015812	Metagenome / Metatranscriptome	252	Y
F061778	Metagenome	131	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10344691	F010571	AGGAGG	MSNTIQENYMQNLYEYLYEQHYKDLSTMSDDVEWIENEAERLAEIELDNFEMEG
Ga0208898_10344696	F061778	GGAGG	MNRYRVAVHYEEGFTVDVKAPNSKEASKVAEEFVSANCGVSESFDNVGEDESKFIKAYHRDYWIVGER
Ga0208898_10344698	F015812	AGGAG	MNKTLYKRLEDICAREYVINKLTEDKFRTFVDFLYDDIRTWDNPLDVSDTDVMYRIEEHLSHMVARILTDTHIGTIHD
Ga0208898_10344699	F106085	AGG	MTNNLLESLRKKLHKTLDKVKNKFTIFKKLKENNKIIINKDNKNNIPNHLKDLSKENLQTLQELYKEKM