Scaffold Ga0208898_1030180

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1030180
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2225
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009502	Metagenome	317	Y
F087931	Metagenome / Metatranscriptome	110	N
F101202	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10301802	F087931	GGA	MKESIENPTETIHQCPQCNSQGEIMMDEQRLKTIFDQEREKYRYRDKLTIEHVQKLEKQIENLMKDKAVLQDQLDRYIDKEMEKR
Ga0208898_10301804	F101202	N/A	MFGPGRSDGEIVKQASGIRNHGSRATRNGGKQMPRKSKKEISNNEYVNNKKFWVQIDFDDCVSIHEELQAKQMFLGDRNKLVPAEKRLLEFTEDVMFGNYKEVTWQ
Ga0208898_10301805	F009502	AGGAGG	MAVEVKKEKYEDIYDCIVSDQVSPNETAEYLEDKNFYKYYIKRRTLGGLWKRNKDA