Scaffold Ga0208898_1005804

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1005804
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6826
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009399	Metagenome	318	N
F043911	Metagenome	155	N
F058112	Metagenome	135	N
F104752	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100580413	F104752	AGG	MSGPITRHHWDALAADIYARGGYRNYGIDPMSILAMLNTIVPQVLQWVADCKRLRDDEVQPAVAAMHARNPAQAKRRTAAQCKKLRRK
Ga0208898_10058043	F009399	GGAGG	MHVIFRHDGTGRRVWMLPLRTGAELRTASHLALRDLTVTADPGSRHVARWETQELAQSALLEYAATTRRPAEQYGVQTQVEAVAYANQRRRDYHRKRPYEIEGVDTGGG
Ga0208898_10058046	F058112	GGAG	MTPTQRQQITSAQATAQARNNEAFRMNPNLQIWLRQVRTAAVIRRTARNFVRWKNE
Ga0208898_10058049	F043911	AGGGGG	LSGEPYVVYRLDTYGRRQYVFRQLSPVDCRAPIRCKGIAAQGWVNSLPKAKTYTGKAAAVAAAKAIADATRHGRDAMRVISLEQAQRERAAALKQRGR