Scaffold Ga0208898_1003747

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1003747
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8898
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F025982	Metagenome / Metatranscriptome	199	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100374713	F008128	N/A	MEPVYVPKLTVSFAVDLEVEYNSFCGKTEEEITEALQDDLDDLLFELPHVTGVYTSCTNIQSNG
Ga0208898_100374715	F041147	N/A	MTTPVAMDTTNEPIDAVSKWQEWYRNHRVVAEMDQPLVTKDSRESMHDTSKATTTLKGSDNLLTDYCKAMSFQKAKEYFADTIAEFTYELSGKELYKAFYAAAMDNMDAVEKEYNKAKQLIDMLRCNNVAP
Ga0208898_10037473	F002333	N/A	MSTQLQQQELNAAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWYYSHALGHLTSNAKLQAHWADKFIHVSDPAKLTALLQSDQTDIGYLVAPDGMRLPNRPIDMDSELDADAKQDSLLSEPTCSCGSFQRQLSNLSSFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYQPPADSVSDGRFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGTALPQLKSAIKK
Ga0208898_10037476	F002738	N/A	MSIDTYGLSSEQYTEFFHKNVRFAAKLYLDTCNILNEEGVGNIDFKTVLDMYQEAVYTANDDCRRYQKSNNPEVLKENDVYAIVPSHQEIIEAVETLMKYTEALDAKLQALTNYVSNLVTVTTAGLEGVATTLDDKVD
Ga0208898_10037477	F001018	N/A	MAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVTEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQKGQQLPNGVKVVQEYSVRSKRIFSEPKLDLVPSEYPGELLPKDSSAD
Ga0208898_10037478	F025982	AGAAG	MSCHEHAIKDFDLQLEMNGLQMEMLMEDGKVLDYHMDEYEDLEQKKLKLLIGKRFHQNACNAYWYWMQREKSGK