Scaffold Ga0208898_1003744

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1003744
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8901
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F005743	Metagenome / Metatranscriptome	391	Y
F026154	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100374420	F005743	GGAG	MKRNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPDEVNQTDGYWRNHRNVEKKFSKQMNGKEDAYWDCKYRVMRVRKA
Ga0208898_100374425	F026154	AGGA	MNGIINIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYKKSRRDNS
Ga0208898_100374428	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEENFEAFKDKLKINKMHDDVRVLYDDHAKFANEMDSILLQKKAKLDNAIHVLEDKLEQWKKVRKWKNEISSSLLREPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLGQEMSKEKINTNTIPKPEFLSITK