NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1003537

Scaffold Ga0208898_1003537


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1003537 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9190
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F009141Metagenome / Metatranscriptome322Y
F014614Metagenome / Metatranscriptome261Y
F021513Metagenome / Metatranscriptome218Y
F090297Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208898_100353710F014614N/AMTDWYADYYRQSRGYNDNDMRELRCAPRNPNLQVPDVFKDRFSTVAEYDAWVEEKRRLYF
Ga0208898_100353711F009141N/AMVPFYRSYLLGGKTIYLDKLAELPDSELNLLNIETMASLEEARRDYDALENKQSEEAGSVYRRLKVAGYFQAAIKLEIQN
Ga0208898_100353712F021513N/AMSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTTSVQKAKSQSKTRKSSRKGKRGVAVLTEAKVLEIKRQLADGGKSVAKIAKEFGVHVTTINCIKWGKTWKNVQLQQPTPVVVAD
Ga0208898_10035375F001841GGAMGQFKPPNFFLGLMRVAAWVFWRDPVKPEPPQPKRPRKPVLGYNVGDIPYELLAVVRVSWYRKGMTYEVEEYQIEESDDAPQQFAYIVGTALRQGADVCVLTQYEPEALGVQE
Ga0208898_10035377F090297N/AMYEPFQAKVDNSDLSPWYYAVGWAKHSLQLQITRYNALGLNTNYEEKQLERLVELEQFLKMSWDQWMESLLPSETAQEVK
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Institute for Fundamental Biomedical Research
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