NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1002858

Scaffold Ga0208898_1002858


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1002858 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10341
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F023848Metagenome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0208898_100285810F003807AGGAGMNDLTQVWLKTDEEKLRSLIADEAKMMPMLDNMQATIRQLKAKQQFRLALLNQLLESVDDTAKYNINNSQEK
Ga0208898_10028582F023848N/AMPRKKRNTNAIDVPLYGEQATIMQDWLTTEKHCIDIVPVGSGKTFLASVALPLFASDEKYHKGKDIIYSAPTGSMIKSLIWEPLKQSCIEHFGLRDGKEINNSELTIKFPNGVFIRCKSAEMKENLRGLNVGIWVADEAALYSQDTLQEITNRLRPRVGSPDTQGRLIVISTPNGNGPLFDLFTLANNNPDRYIVRHMNYLEMRSGNLEFIEEQKRILSPLKFEQDYMCSWESVQDQFFYTFNKAKHCHDIFDDLGDIYTFHDFNKKRMCCTVAQVTRPGERSGKIEILKSYAIKDCGTEQLAQQIRQDYPRRRIYSIIDMSGAQTNRDTTSVFGVTDRVILEKYGFTIINTRKSNPLVSDTDNSSNAFINRGGLLVSHYDTELIEALQSYHFEDGTRKKLVKYTDAKYSHIDGLGDCIRYGIHHLFPVQHDSWEGAEYVSTDPNMQRRMQPGLDHVPHSPLFKGGPTWEEIMGNAEQDVDHVIW
Ga0208898_10028587F002260AGGAMSVPYQRVSNATVQDIIFYDPAAERRAAQMQIDWDDYFTVGSQEILYWLEFGWWPQYCDNVIGANYYANLPNGQLISAFNPNLLIKNDQTLIRLDTFQAVKIFYESIVSDTSNVNSVDAANYNHALERYEKEQEKALQLQNFYDLYQDAPNGPTTKLEENWVADPDYFNNNRRWF

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