Scaffold Ga0208898_1002007

Overview

Basic Information

• Taxon OID: 3300025671
• Scaffold ID: Ga0208898_1002007
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12864
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F006094	Metagenome / Metatranscriptome	382	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100200720	F006094	AGGAG	MLLHEFYSDEDCSRGDMSYRKSCVFKEPDGSYTIVLIQDGAIVDELNLLGHSEQYAEDTAEDWVMGVRR
Ga0208898_100200721	F002430	AGGAG	MMTLKLPKKQVNAILVALDAEIENQLGGRPVDWESFPEVAAMLMAYYTTRCNFEEENGNAVA
Ga0208898_100200723	F035125	N/A	RFVVEQDFEIEVRDSKLGMGSVFAIGDVMVSSGFDQWNVLTHESIFDNPVGELRPVHDSHWSDANLYNLGLHSEYIQPWLFEGEKDTDPYEETEEKEIYNA